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Serial cloner help5/5/2023 ![]() ![]() If the destination disk is SSD, please ensure to enable the option Check the option if the target is SSD. You can also change the size of the destination partition. Then check the layout of the destination drive. If you want to clone the partition in sector level, please also tick the option Sector by sector clone. Choose the source and destination partition. Then you will have a same partition on the destination disk and have the same data. STING Millenium - web-based suite of programs for visualizing molecular structure and comprehensive structure analysis:ĬASTp - webserver for identification and measurements of surface accessible pockets as well as interior inaccessible cavitiesPartition Clone is able to clone the source partition to a existing partition or clone to unallocated space. PARVATI anisotropic displacement parameters statisticsįADE and PADRE - Shape and Complementarity Server NCONT - (ccp4) analyses contacts between subsets of atoms in a PDB file VADAR (Volume, Area, Dihedral Angle Reporter) SURFACE and AREAIMOL (ccp4) -surface programsĬastP - Volume and surface calculation of pocket or cavity VOIDOO - look for interior cavities, volumes of particular cavities (like active sites) Monster - A tool for inferring non-covalant interactions in proteins Protein Interaction Server - to obtain surface calculations NACCESS - Surface area calculaitons, per residue, or atom LIGPLOT/LigPlus/DIMPLOT - Interactions around a ligand or interface SiteEngine - wesite to define a active site and then search the PDB for similar sites. PDBredo - a site where they re-refined everyone's structures ProtBud - PC program to evaluate multimer contacts and compare to related structures. PISA-Protein Interfaces, Surfaces and Assemblies (using PDB or new coordinates) SCOP - Structural Classification of Proteins MUSTANG - A MUtiple STructure AligNment alGorithm Indonesia - USF's biological sequence analysis (not installed) - multiple sequence alignments STRAP - Multiple Structural/Sequence Alignment POSA - Partial Order Structural Alignments MATRAS - MArkovian TRAnsition of Structure evolution - does multiple alignments ![]() STAMP - Structural Alignment of Multiple Proteins (several choices) SSM - Secondary Structure Matching - multiple PDB comparison and sequence alignments. MSDServer - Macromolecular Structure Database (Can provide %similarity cutoff to see entire structural family) VAST - (NCBI) Vector Alignment of Search Tool - protein structural neighbors IP6-activated fusion proteins: maps, paper, protocol, Vector sequence (2000) A modular Set of Prokaryotic and Eukaryotic Expression Vectors Analytical Biochemistry 277, 109-120): pKA8 complete DNA sequence, pKA8 Cloning Map, Original Cloning Paper description Yeast Vectors: pYES2.0, pTF162, Stuff from Tim's lab about this series of vectorsīaculoVirus Vectors: pAcGP67-A for expression with a signal sequence for secretion PGEX Vectors: pGEXvectors, pGST-parallel, pGST-PP and pGST-TEV vectors from Steve (additional GST-PP and TEV vector sequences) Modified pET Vectors: pET11a-His(7)-PP, pET16b-TEV PET151-TOPO Cloning site map and full vector mapĭUET Vectors: pACYDuet-1, pCDFDuet-1, pCOLADuet-1, pRSFDuet-1, pETDuet-1 Novagen's pET vector manual (expression, toxcicity tips, etc) ![]() SLIC cloning, pGST-PP-GFP and pHIS-SUMO-GFP Ligation Independent Cloning (LIC) vectors from Mark Connelly: pMCSG10, pMCSG7, pMCSG17-20, pMCSG19, pMCSG21 Yeast 2-hybrid vectors (sundquist lab) pGADT7 and pGBKT7 PDEST14 pDEST15, pDEST17, pENTR/TEV/D-TOPO, MCS PENTRL1pLaclacZaL4, pENTRL1pLaclacZaR5, pENTR元pLactetL2, pENTRL5LacIL4, pENTRL5pLacSpecL2, pENTRR4pLacSpecR3 ![]()
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